Welcome to epytope’s documentation!

Welcome to the class and function documentation of epytope.

Tutorials on how to use epytope can be found at:

https://github.com/FRED-2/epytope/tree/master/epytope/tutorials.

• Basic
  • epytope.Core Module
    • Core.Allele
      • AlleleFactory
      • Allele
      • CombinedAllele
      • MouseAllele
    • Core.Base
      • MetadataLogger
      • APluginRegister
      • ACleavageSitePrediction
      • ACleavageFragmentPrediction
      • AEpitopePrediction
      • ASVM
      • AExternal
      • ATAPPrediction
      • AHLATyping
      • deprecated()
    • Core.Generator
    • Core.Peptide
    • Core.Protein
    • Core.Result
    • Core.Transcript
    • Core.Variant
  • epytope.IO Module
    • IO.ADBAdapter
    • IO.EnsemblAdapter
    • IO.FileReader
    • IO.MartsAdapter
    • IO.RefSeqAdapter
    • IO.UniProtAdapter
• Prediction
  • epytope.CleavagePrediction Module
    • CleavagePrediction.External
    • CleavagePrediction.PSSM
    • Module contents
  • epytope.TAPPrediction Module
    • TAPPrediction.PSSM
    • TAPPrediction.SVM
    • Module contents
  • epytope.EpitopePrediction Module
    • EpitopePrediction.External
    • EpitopePrediction.PSSM
    • EpitopePrediction.SVM
    • Module contents
• Vaccine Design
  • epytope.EpitopeSelection Module
    • EpitopeSelection.OptiTope
  • epytope.EpitopeAssembly Module
    • EpitopeAssembly.EpitopeAssembly
    • EpitopeAssembly.MosaicVaccine
• HLA Typing
  • epytope.HLAtyping Module
    • HLAtyping.External

Indices and tables

• Index

• Module Index

• Search Page