Basic

• epytope.Core Module
  • Core.Allele
    • AlleleFactory
      • AlleleFactory.mro()
    • Allele
      • Allele.get_metadata()
      • Allele.log_metadata()
    • CombinedAllele
      • CombinedAllele.locus
      • CombinedAllele.supertype
      • CombinedAllele.subtype
      • CombinedAllele.get_metadata()
      • CombinedAllele.log_metadata()
    • MouseAllele
      • MouseAllele.locus
      • MouseAllele.supertype
      • MouseAllele.subtype
      • MouseAllele.get_metadata()
      • MouseAllele.log_metadata()
  • Core.Base
    • MetadataLogger
      • MetadataLogger.log_metadata()
      • MetadataLogger.get_metadata()
    • APluginRegister
      • APluginRegister.mro()
      • APluginRegister.register()
    • ACleavageSitePrediction
      • ACleavageSitePrediction.name
      • ACleavageSitePrediction.version
      • ACleavageSitePrediction.supportedLength
      • ACleavageSitePrediction.cleavagePos
      • ACleavageSitePrediction.predict()
    • ACleavageFragmentPrediction
      • ACleavageFragmentPrediction.name
      • ACleavageFragmentPrediction.version
      • ACleavageFragmentPrediction.supportedLength
      • ACleavageFragmentPrediction.cleavagePos
      • ACleavageFragmentPrediction.predict()
    • AEpitopePrediction
      • AEpitopePrediction.name
      • AEpitopePrediction.version
      • AEpitopePrediction.supportedAlleles
      • AEpitopePrediction.supportedLength
      • AEpitopePrediction.convert_alleles()
      • AEpitopePrediction.predict()
    • ASVM
      • ASVM.encode()
    • AExternal
      • AExternal.command
      • AExternal.parse_external_result()
      • AExternal.is_in_path()
      • AExternal.get_external_version()
    • ATAPPrediction
      • ATAPPrediction.name
      • ATAPPrediction.version
      • ATAPPrediction.supportedLength
      • ATAPPrediction.predict()
    • AHLATyping
      • AHLATyping.name
      • AHLATyping.version
      • AHLATyping.predict()
    • deprecated()
  • Core.Generator
  • Core.Peptide
  • Core.Protein
  • Core.Result
  • Core.Transcript
  • Core.Variant
• epytope.IO Module
  • IO.ADBAdapter
  • IO.EnsemblAdapter
  • IO.FileReader
  • IO.MartsAdapter
  • IO.RefSeqAdapter
  • IO.UniProtAdapter

Prediction

• epytope.CleavagePrediction Module
  • CleavagePrediction.External
  • CleavagePrediction.PSSM
  • Module contents
• epytope.TAPPrediction Module
  • TAPPrediction.PSSM
  • TAPPrediction.SVM
  • Module contents
• epytope.EpitopePrediction Module
  • EpitopePrediction.External
  • EpitopePrediction.PSSM
  • EpitopePrediction.SVM
  • Module contents

Vaccine Design

• epytope.EpitopeSelection Module
  • EpitopeSelection.OptiTope
• epytope.EpitopeAssembly Module
  • EpitopeAssembly.EpitopeAssembly
  • EpitopeAssembly.MosaicVaccine

HLA Typing

• epytope.HLAtyping Module
  • HLAtyping.External